human microbiome 4

Microbiome: Understanding Our Inner Ecosystem

In the vast universe of our body, a complex and bustling community thrives quietly but critically. This community is not human cells, but trillions of microorganisms, including a staggering 38 trillion bacteria, which intriguingly make up 50% of our body by cell count. 1,2 Understanding this community, known as our microbiome, is not just fascinating—it’s essential to grasping how we function, thrive, and interact with our environment. 3,4

Meet Your Microbiome: A World Within

Our microbiome includes the trillions of microbial cells and their genetic material that inhabit different parts of our body such as the gastrointestinal tract, skin, and even armpits. 5 Each of these areas hosts a unique microbiome essential to our health. Contrary to popular belief, not all bacteria are harmful; most are either harmless (commensal) or beneficial (mutualistic), playing a crucial role in our bodily functions. 6,7

Inherited Biodiversity: The Seeding of Your Microbiome

Interestingly, our microbiome begins to form at birth and continues to develop through early childhood. 8 This process, known as seeding, is initiated through delivery in the vaginal canal, skin-to-skin contact, and breastfeeding, and is later influenced by our environment including interaction with family and pets. 9 This early microbial colonization lays the foundation for our immune system, teaching it to differentiate between harmful invaders and harmless entities. 10

The Multifaceted Roles of Bacteria in Our Body

The bacteria in our gut perform myriad crucial functions. They maintain the integrity of the gut barrier, produce neurotransmitters that facilitate intestinal movements, and break down dietary fiber, producing short-chain fatty acids like butyrate which have significant anti-inflammatory effects. 11,12 Moreover, these bacteria synthesize vital nutrients such as B vitamins and vitamin K, and play a protective role in various body systems including the urogenital tract. 13

The Gut-Brain Connection: An Emerging Frontier

Recent research has shed light on the gut-brain axis, revealing how gut flora may influence our mood, appetite, and even our circadian rhythms. 14,15 This emerging field suggests that our mental and emotional health could be deeply intertwined with the state of our gut microbiome, highlighting the potential for new therapeutic approaches targeting microbial health.16,17

The Gut Barrier: Our Internal Protector

The gut barrier is a critical defense mechanism comprising a single layer of epithelial cells and a thick mucus layer. 18 It protects against harmful substances while allowing nutrient absorption. Compromise of this barrier, often referred to as “leaky gut,” can lead to various health issues, including inflammation and allergies[19].

Personalized Microbiome Health: A New Paradigm

Unlike the human genome, which is relatively fixed, our microbiome is dynamic, influenced daily by diet, exercise, and even sleep. 20 This flexibility means that we can potentially shape our microbiome through lifestyle choices to enhance our health. Incorporating probiotics and prebiotics into our diet, for instance, can support beneficial bacterial populations and overall health. 21,22

Conclusion

The study of the microbiome is revolutionizing our understanding of human biology. No longer do we see ourselves as purely human entities but as complex ecosystems comprised of human and microbial components. 23,24 This paradigm shift is not just academic; it suggests a transformative approach to medicine, hygiene, and diet that could redefine health in the 21st century 25. In conclusion, as we continue to explore this inner universe, we may find that the key to health is not just in treating the human body but in fostering the health of the millions of microbes that call us home. This is a frontier of many possibilities, where each discovery holds the potential to redefine aspects of medicine and personal health.

References 

1. Sender R, Fuchs S. & Milo R. Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans. Cell 164, 337–340 (2016). [PubMed] [Google Scholar]

2. Turnbaugh PJ et al. The human microbiome project. Nature 449, 804–810 (2007). [PMC free article] [PubMed] [Google Scholar]

3. Locey KJ & Lennon JT Scaling laws predict global microbial diversity. Proc. Natl. Acad. Sci. U. S. A 113, 5970–5975 (2016). [PMC free article] [PubMed] [Google Scholar]

4. Frank DN et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc. Natl. Acad. Sci. U. S. A 104, 13780–13785 (2007). [PMC free article] [PubMed] [Google Scholar]

5. Gevers D. et al. The treatment-naive microbiome in new-onset Crohn’s disease. Cell Host Microbe 15, 382–392 (2014). [PMC free article] [PubMed] [Google Scholar]

6. Ni J. et al. A role for bacterial urease in gut dysbiosis and Crohn’s disease. Sci. Transl. Med 9, (2017). [PMC free article] [PubMed] [Google Scholar]

7. Kostic AD et al. Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe 14, 207–215 (2013). [PMC free article] [PubMed] [Google Scholar]

8. Jiang H. et al. Altered fecal microbiota composition in patients with major depressive disorder. Brain. Behav. Immun 48, 186–194 (2015). [PubMed] [Google Scholar]

9. Zheng P. et al. Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism. Mol. Psychiatry 21, 786–796 (2016). [PubMed] [Google Scholar]

10. Gilbert JA et al. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature 535, 94–103 (2016). [PubMed] [Google Scholar]

11. Punt CJA, Koopman M. & Vermeulen L. From tumour heterogeneity to advances in precision treatment of colorectal cancer. Nat. Rev. Clin. Oncol 14, 235–246 (2017). [PubMed] [Google Scholar]

12. Debelius J. et al. Tiny microbes, enormous impacts: what matters in gut microbiome studies? Genome Biol. 17, 217 (2016). [PMC free article] [PubMed] [Google Scholar]

13. Integrative HMP (iHMP) Research Network Consortium. The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease. Cell Host Microbe 16, 276–289 (2014). [PMC free article] [PubMed] [Google Scholar]

14. Lax S. et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science 345, 1048–1052 (2014). [PMC free article] [PubMed] [Google Scholar]

15. Goodrich JK et al. Human Genetics Shape the Gut Microbiome. Cell 159, 789–799 (2014). [PMC free article] [PubMed] [Google Scholar]

16. Ridaura VK et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 341, 1241214 (2013). [PMC free article] [PubMed] [Google Scholar]

17. Turnbaugh PJ et al. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc. Natl. Acad. Sci. U. S. A 107, 7503–7508 (2010). [PMC free article] [PubMed] [Google Scholar]

18. Turnbaugh PJ et al. A core gut microbiome in obese and lean twins. Nature 457, 480–484 (2009). [PMC free article] [PubMed] [Google Scholar]

19. Seedorf H. et al. Bacteria from diverse habitats colonize and compete in the mouse gut. Cell 159, 253–266 (2014). [PMC free article] [PubMed] [Google Scholar]

20. Karczewski J, Poniedziałek B, Adamski Z. & Rzymski P. The effects of the microbiota on the host immune system. Autoimmunity 47, 494–504 (2014). [PubMed] [Google Scholar]

21. Schirmer M. et al. Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity. Cell 167, 1897 (2016). [PubMed] [Google Scholar]

22. Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK & Knight R. Diversity, stability and resilience of the human gut microbiota. Nature 489, 220–230 (2012). [PMC free article] [PubMed] [Google Scholar]

23. O’Toole PW Changes in the intestinal microbiota from adulthood through to old age. Clin. Microbiol. Infect. Off. Publ. Eur. Soc. Clin. Microbiol. Infect. Dis 18 Suppl 4, 44–46 (2012). [PubMed] [Google Scholar]

24. Koenig JE et al. Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl. Acad. Sci. U. S. A 108 Suppl 1, 4578–4585 (2011). [PMC free article] [PubMed] [Google Scholar]

25. Weng M. & Walker WA The role of gut microbiota in programming the immune phenotype. J. Dev. Orig. Health Dis 4, 203–214 (2013). [PMC free article] [PubMed] [Google Scholar]